a little automation should fix that. Like start the phaser at zero then gently creep it back up. Or you could possibly clone the track you had that lead on and remove the phaser. I think it works fantastically with the rest of the track it's just that beginning part that doesn't quite sound right. I also think that screaching organ thing in the beginning doesn't quite fit with the rest of the track. Try lowering that a few octaves and see if it sounds better.
To be honest the Phaser at the beginning was a mistake. lol.
Judging for Ministry of Soundation Contest: Hmmm, the lead is pretty good but the phaser at the beginning really disjoints it. The church organ chords don't fit together with the lead for me, but the beat works well with the track. Also the high-ish organ melody in the first half of the track disjoints the track more. Not a bad effort! I'm giving this a 2.8 out of 5! :)
Judging for Ministry of Soundation Contest: I like the energy in this. That's definitely one of the first things that I feel in this track. I do feel like there are some pieces in this that aren't quite fitting together. The beginning could use some more juice. That main lead is good but I feel that there is not a whole lot of support of this track with other parts. I think it might be the phaser at the beginning that bugs me the most. Just, what feels, a minor sitch in the track. I am giving this a 4 out of 5. Not bad!